gefpy.cgef_writer_cy

Provides access to the cgef_writer interface.

cgef_writer_cy.generate_cgef(cgef_file, bgef_file, mask_file, block_size: list)

Generate cell bin GEF file from bgef + mask.

Parameters

  • cgef_file – Output CGEF filepath.

  • bgef_file – Input BGEF filepath.

  • mask_file – Input make filepath.

  • block_size – Block size list, usually set to [256,256].

cgef_writer_cy.cgem_to_cgef(cgem_file, outpath, block_size: list)

Generate cell bin GEF file from cgem.

Parameters

  • cgem_file – Input cgem path.

  • outpath – Output cgef path.

  • block_size – Block size list, usually set to [256,256].